Check out some of the video abstracts submitted by this year’s presenters. Be sure to attend their presentations at the Summit!
S05: Ignite-style Talks
Can Mobile Apps Help Young Children’s Communication and Social Interaction?
Yao Du
View the video abstract
S41: Ignite-style Talks
Dataset Development Deep Dive: The Team Weighs In
Katie Allen, Anna Roberts View the video abstract
Cohort Identification of Axial Spondyloarthritis in a Large Healthcare Dataset: Current and Future Methods
Shaobo Pei, Gopi Penmetsa, Jianwei Leng, Grant Cannon, Daniel Clegg, Brian Sauer, Jessica Walsh View the video abstract
S32: Panel - Mental health research in the open science era: special issues in sharing sensitive behavioral health data
Jessica Tenenbaum, Gregory Farber, Isaac Galatzer-Levy, Alisa Busch, Wendy Ingram View the video abstract
S37: Panel - Beyond Genetics and EHRs: Using Self-Directed Technology-Based Health Surveys in the All of Us Precision Medicine Program
Robert M. Cronin, Karthik Natarajan, Taneya Koonce, Susan Tirhi, Stephanie Fowler View the video abstract
S02: Oral Presentations - Phenotyping
Cost-sensitive Active Learning for Phenotyping of Electronic Health Records (student)
Zongcheng Ji, Qiang Wei, Amy Franklin, Trevor Cohen, Hua Xu View the video abstract
S04: Oral Presentations - Machine Learning in Clinical Predictive Modeling I
Predictive Modeling of the Total Joint Replacement Surgery Risk: a Deep Learning Based Approach with Claims Data
Riyi Qiu, Yugang Jia, Fei Wang, Pramod Divakarmurthy, Samuel Vinod, Behlool sabir, Mirsad Hadzikadic View the video abstract
Improving length of stay prediction using a hidden Markov model (student)
Mani Sotoodeh, Joyce C. Ho View the video abstract
Deep Patient Representation of Clinical Notes via Multi-Task Learning for Mortality Prediction (student)
Yuqi Si, Kirk Roberts View the video abstract
S07: Oral Presentations - Data Exchange and Patient Management
Preliminary evaluation of the Chest Pain Dashboard, a FHIR-based approach for integrating health information exchange information directly into the clinical workflow
Titus K. Schleyer, Saurabh Rahurkar, Allissia M. Baublet, Matthias Kochmann, Xia Ning, Douglas K. Martin, John T. Finnell, Keith W. Kelley, FHIR D. Team, Jason T. Schaffer View the video abstract
S15: Oral Presentations - Machine Learning and Text Processing
Context-Driven Concept Annotation in Radiology Reports: Anatomical Phrase Labeling
Henghui Zhu, Ioannis Paschalidis, Chirstopher Hall, Amir Tahmasebi View the video abstract
Negation Scope Detection in Clinical Notes and Scientific Abstracts: A Feature-enriched LSTM-based Approach
Elena Sergeeva, Henghui Zhu, Peter Prinsen, Amir Tahmasebi View the video abstract
Classification of Pulmonary Nodular Findings based on Characterization of Change using Radiology Reports
Jianbo Yuan, Henghui Zhu, Amir Tahmasebi View the video abstract
S20: Oral Presentations - Clinical Decision Support
An electronic notification system for improving patient flow in the emergency department
Hojjat Salmasian, Adam B. Landman, Charles Morris View the video abstract
S26: Oral Presentations - Patients, Populations and Data Science
On the Role of Question Summarization and Information Source Restriction in Consumer Health Question Answering
Asma Ben Abacha, Dina Demner-Fushman View the video abstract
S29: Oral Presentations - Case Studies: EHR Data
Comparing the Study Populations in Dietary Supplement and Drug Clinical Trials for Metabolic Syndrome and Related Disorders
Zhe He, Rubina F. Rizvi, Fan Yang, Terrence J. Adam, Rui Zhang View the video abstract
S38: Oral Presentations - Informatics of Systems and Populations
Facilitating Inclusion of Geocoded Pollution Data into Health Studies (student)
Rebecca Greenblatt, Blanca E. Himes View the video abstract
A Network-Based Compartmental Model For The Spread Of Whooping Cough In Nebraska (student)
Kimia Ameri, Kathryn D. Cooper View the video abstract
S39: Oral Presentations - Case Studies: Clinical
Detecting Patterns of Prescription Drug Use During Pregnancy and Lactation with Visualization Techniques (student)
Ou Stella Liang, Jeanne S. Sheffield, Casey O. Taylor View the video abstract
Estimation of the Mismatch between Admission and Discharge Diagnosis for Respiratory Patients, and Implications on the Length of Stay and Hospital Charges
Dimitrios Zikos, Aashara Shrestha, Leonidas Fegaras View the video abstract
Factors Affecting Electroconvulsive Therapy Ictal Outcomes: Duration and Postictal Suppression
Wendy Ingram, Cody Weston, Wei Dar Lu, Caleb Hodge, S. Mark Poler, Fatin Nahi, Sharon Larson View the video abstract
S43: Oral Presentations - Selected Topics in Bioinformatics
A Decade of Translational Bioinformatics: A Retrospective Analysis of “Year-in-Review” Presentations
Joseph D. Romano, Michael Bernauer, Scott P. McGrath, Shashwat Nagar, Robert R. Freimuth View the video abstract
S45: Oral Presentations - Privacy and Bias in Data Science
Kung Faux Pandas: Simplifying privacy protection
James King, Seth Russell, Tellen D. Bennett, Debashis Ghosh View the video abstract
S50 - Oral Presentations - Classification and Prediction
Building Computational Models to Predict One-Year Mortality in ICU Patients with Acute Myocardial Infarction and Post Myocardial Infarction Syndrome (student)
Laura A. Barrett, Seyedeh Neelufar Payrovnaziri, Jiang Bian, Zhe He View the video abstract
S02: Oral Presentations - Phenotyping
A Comparison of Three Computable Phenotypes Based on Clinical Classification Criteria for Systemic Lupus Erythematosus to Detect Patients in Electronic Health Record Data
Theresa L. Walunas, Anika Ghosh, Kathryn Jackson, Ahn Chung, Daniel Erickson, Karen Mancera-Cuevas, Abel Kho, Rosalind Ramsey-Goldman View the video abstract
S03: Oral Presentation - NLP Case Studies
In Search of the Holy Grail: Applying NLP to Identify Recurrent Cancer
Rebecca A. Ottesen, Janet Nikowitz, Julie Hom, Julie A. Kilburn, Thanh Dellinger, Joyce C. Niland View the video abstract
Enabling Seizure Classification in Critical Care via Active Learning on Massive Electroencephalogram (EEG) Data
Sungtae An, Olivier Deiss, Siddharth Biswal, Jin Jing, Haoqi Sun, Eric S. Rosenthal, Sahar Zafar, M. Brandon Westover, Jimeng Sun View the video abstract
S07: Oral Presentations - Data Exchange and Patient Management
Integrating Social Determinants of Health in an Electronic Medical Record to Better Manage Pediatric Asthma
Anjum Khurshid, Steven B. Andrews, Matt Sither, Autumn Kaerwer, Rick Peters View the video abstract
S11: Oral Presentations - Genomics
Reference-based annotation of single-cell transcriptomes identifies a profibrotic macrophage niche after tissue injury
Dvir Aran View the video abstract
S17: Oral Presentations - Visualizing and Use of Data for Quality Improvement
Monitoring the Monitors: Data-Driven Alarm Management Strategies for Clinical Devices at Duke Health
Bilikis J. Akindele View the video abstract
Automated Report Turnaround Time Workflow Reconstruction and Analysis in Echocardiography Lab Based on PACS Data
Qianxi li, Justin Wiggs, Deyu Sun, Craig Sable View the video abstract
S21: Oral Presentations - Patient Engagement
Impact of Promoting Patient Access to their Electronic Healthcare Record: A Systematic Review
Archana Tapuria, Talya Porat, Dipak KALRA, Glen D'souza, Vasa Curcin View the video abstract
S25: Oral Presentations - Applications of Data Sharing & Data Standards
Applying a FHIR-based Data Normalization Pipeline to the Identification of Patients with Obesity and Its Comorbidities from Discharge Summaries
Na Hong, Andrew Wen, Daniel Stone, Paul Kingsbury, Luke V. Rasmussen, Prakash Adekkanattu, Yuan Luo, Jyotishman Pathak, Hongfang Liu, Guoqian Jiang View the video abstract
S30: Oral Presentations - Data Mining Appliced to Knowledge
Quantifying and adjusting for missing data bias in claims data
Rachel D. Melamed View the video abstract
S33: Oral Presentations - Cancer and Genetics Informatics
Classifying Non-Small Cell Lung Cancer Histopathology Types and Transcriptomic Subtypes using Convolutional Neural Networks
Kun-Hsing Yu, Feiran Wang, Gerald Berry, Christopher Re, Russ B. Altman, Michael Snyder, Isaac S. Kohane View the video abstract
Interpretation and self-efficacy of DTC genetic tests by medical professionals
Scott P. McGrath, Nephi Walton, Marc S. Williams, Katherine K. Kim, Kiran Bastola View the video abstract
S35: Oral Presentations - Phenotyping, Coding and Quality Methods
Medical Sequence Encoding for the Stratification of Complex Disorder
Isotta Landi, Riccardo Miotto, Hao-Chih Lee, Matteo Danieletto, Alessandro Laganà, Cesare Furlanello, Joel Dudley View the video abstract
S39: Oral Presentations - Case Studies: Clinical
Automatic Trial Eligibility Surveillance: Pilot Study Focused on Breast Cancer
Stephane Meystre, Paul M. Heider, Youngjun Kim, Daniel Aruch, Carolyn Britten View the video abstract
S44: Oral Presentations - Workflow and Teamwork
An Outpatient Performance Improvement Project: Workflow Analysis to Improve Care Coordination in the Homeless Population by Evaluating Patient Wait Times
Angela Ross, Kai Makeda, Travis F. Holder View the video abstract
Poster Session 1
Unraveling Renal Cell Carcinoma Differentiation and Prognoses by Integrative Histopathology-Transcriptomics Analysis (student)
Rebecca Barber, Isaac S. Kohane, Kun-Hsing Yu View the video abstract
Definitions matter: Data issues in sepsis quality improvement efforts
Daniel G. Duncan, Rebecca Kitzmiller, Carol F. Durham View the video abstract
Using Apple Machine Learning Algorithms to Detect and Subclassify Non-Small Cell Lung Cancer
Steven A. Borkowski, Stephen M. Mastorides, Catherine P. Wilson, Lauren A. DeLand, Andrew A. Borkowski View the video abstract
Provider Survey on Automated Clinical Decision Support System for Cardiovascular Risk Assessment
Alisha P. Chaudhry, Sujith Samudrala, Francisco Lopez-Jimenez, Jane Shellum, Rick A. Nishimura, Rajeev Chaudhry, Hongfang Liu, Adelaide M. Arruda-Olson View the video abstract
Poster Session 2
REDCap Data Convert: a script to ETL spreadsheet data for REDCap
Kaitlyn Lavan, Peter D. Stetson, John Philip View the video abstract
Predictive Models to Identify Axial Spondyloarthritis
Shaobo Pei, Gopi Penmetsa, Grant Cannon, Daniel Clegg, Brian Sauer, Jessica Walsh View the video abstract
Development and Evaluation of a Website to Facilitate Cascade Screening for Familial Hypercholesterolemia
Hana Bangash, Thomas Suther, David Kochan, Iftikhar J. Kullo View the video abstract
eagle-i: An Open Source, Ontology-Driven and Domain-Agnostic Discovery Platform
Sophia K. Cheng, Juliane Schneider, Marc Ciriello, Diane Keogh, Douglas Macfadden View the video abstract
Unsupervised Topic Modeling to Quantify Severe Infection Heterogeneity
Alison E. Fohner, John D. Greene, Brian L. Lawson, Jonathan H. Chen, Patricia Kipnis, Gabriel J. Escobar, Vincent Liu View the video abstract
Computational Drug Repositioning for Precision Cancer Oncology based on Cancer Cells Screening and Analysis
Shaofeng Wu, Yaoqin Lu, Majumdar Abhishek, Lang Li, Lijun Cheng View the video abstract
S18: Systems Demonstrations - Clinical Data in Research
Data visualizations and millisecond queries in i2b2
Nick Benik, Katy Borner, Nick Brown, Bruce W. Herr, Yun William Yu, Griffin M. Weber View the video abstract
S36: Systems Demonstrations - Clinical Data in Research III
DeDeRE - Deriving data accuracy and quality from Electronic Medical Record data for use in clinical research
Ye "Devin" Tian, Harry Menegay, Erin Fogarty, Mark F. Beno, Jill Barnholtz-Sloan View the video abstract
W07: Hands-on Full Lifecycle Data Science Workshop
Lisiane Pruinelli, Tamara J. Winden, Steven G. Johnson View the video abstract
