AMIA 2019 Informatics Summit Video Abstracts

Check out some of the video abstracts submitted by this year’s presenters. Be sure to attend their presentations at the Summit!

S05: Ignite-style Talks

Can Mobile Apps Help Young Children’s Communication and Social Interaction?
Yao Du
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S41: Ignite-style Talks

Dataset Development Deep Dive: The Team Weighs In
Katie Allen, Anna Roberts
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Cohort Identification of Axial Spondyloarthritis in a Large Healthcare Dataset: Current and Future Methods
Shaobo Pei, Gopi Penmetsa, Jianwei Leng, Grant Cannon, Daniel Clegg, Brian Sauer, Jessica Walsh
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S32: Panel - Mental health research in the open science era: special issues in sharing sensitive behavioral health data

Jessica Tenenbaum, Gregory Farber, Isaac Galatzer-Levy, Alisa Busch, Wendy Ingram
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S37: Panel - Beyond Genetics and EHRs: Using Self-Directed Technology-Based Health Surveys in the All of Us Precision Medicine Program

Robert M. Cronin, Karthik Natarajan, Taneya Koonce, Susan Tirhi, Stephanie Fowler
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S02: Oral Presentations - Phenotyping

Cost-sensitive Active Learning for Phenotyping of Electronic Health Records (student)
Zongcheng Ji, Qiang Wei, Amy Franklin, Trevor Cohen, Hua Xu
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S04: Oral Presentations - Machine Learning in Clinical Predictive Modeling I

Predictive Modeling of the Total Joint Replacement Surgery Risk: a Deep Learning Based Approach with Claims Data
Riyi Qiu, Yugang Jia, Fei Wang, Pramod Divakarmurthy, Samuel Vinod, Behlool sabir, Mirsad Hadzikadic
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Improving length of stay prediction using a hidden Markov model (student)
Mani Sotoodeh, Joyce C. Ho
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Deep Patient Representation of Clinical Notes via Multi-Task Learning for Mortality Prediction (student)
Yuqi Si, Kirk Roberts
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S07: Oral Presentations - Data Exchange and Patient Management

Preliminary evaluation of the Chest Pain Dashboard, a FHIR-based approach for integrating health information exchange information directly into the clinical workflow
Titus K. Schleyer, Saurabh Rahurkar, Allissia M. Baublet, Matthias Kochmann, Xia Ning, Douglas K. Martin, John T. Finnell, Keith W. Kelley, FHIR D. Team, Jason T. Schaffer
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S15: Oral Presentations - Machine Learning and Text Processing

Context-Driven Concept Annotation in Radiology Reports: Anatomical Phrase Labeling
Henghui Zhu, Ioannis Paschalidis, Chirstopher Hall, Amir Tahmasebi
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Negation Scope Detection in Clinical Notes and Scientific Abstracts: A Feature-enriched LSTM-based Approach
Elena Sergeeva, Henghui Zhu, Peter Prinsen, Amir Tahmasebi
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Classification of Pulmonary Nodular Findings based on Characterization of Change using Radiology Reports
Jianbo Yuan, Henghui Zhu, Amir Tahmasebi
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S20: Oral Presentations - Clinical Decision Support

An electronic notification system for improving patient flow in the emergency department
Hojjat Salmasian, Adam B. Landman, Charles Morris
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S26: Oral Presentations - Patients, Populations and Data Science

On the Role of Question Summarization and Information Source Restriction in Consumer Health Question Answering
Asma Ben Abacha, Dina Demner-Fushman
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S29: Oral Presentations - Case Studies: EHR Data

Comparing the Study Populations in Dietary Supplement and Drug Clinical Trials for Metabolic Syndrome and Related Disorders
Zhe He, Rubina F. Rizvi, Fan Yang, Terrence J. Adam, Rui Zhang
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S38: Oral Presentations - Informatics of Systems and Populations

Facilitating Inclusion of Geocoded Pollution Data into Health Studies (student)
Rebecca Greenblatt, Blanca E. Himes
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A Network-Based Compartmental Model For The Spread Of Whooping Cough In Nebraska (student)
Kimia Ameri, Kathryn D. Cooper
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S39: Oral Presentations - Case Studies: Clinical

Detecting Patterns of Prescription Drug Use During Pregnancy and Lactation with Visualization Techniques (student)
Ou Stella Liang, Jeanne S. Sheffield, Casey O. Taylor
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Estimation of the Mismatch between Admission and Discharge Diagnosis for Respiratory Patients, and Implications on the Length of Stay and Hospital Charges
Dimitrios Zikos, Aashara Shrestha, Leonidas Fegaras
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Factors Affecting Electroconvulsive Therapy Ictal Outcomes: Duration and Postictal Suppression
Wendy Ingram, Cody Weston, Wei Dar Lu, Caleb Hodge, S. Mark Poler, Fatin Nahi, Sharon Larson
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S43: Oral Presentations - Selected Topics in Bioinformatics

A Decade of Translational Bioinformatics: A Retrospective Analysis of “Year-in-Review” Presentations
Joseph D. Romano, Michael Bernauer, Scott P. McGrath, Shashwat Nagar, Robert R. Freimuth
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S45: Oral Presentations - Privacy and Bias in Data Science

Kung Faux Pandas: Simplifying privacy protection
James King, Seth Russell, Tellen D. Bennett, Debashis Ghosh
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S50 - Oral Presentations - Classification and Prediction

Building Computational Models to Predict One-Year Mortality in ICU Patients with Acute Myocardial Infarction and Post Myocardial Infarction Syndrome (student)
Laura A. Barrett, Seyedeh Neelufar Payrovnaziri, Jiang Bian, Zhe He
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S02: Oral Presentations - Phenotyping

A Comparison of Three Computable Phenotypes Based on Clinical Classification Criteria for Systemic Lupus Erythematosus to Detect Patients in Electronic Health Record Data
Theresa L. Walunas, Anika Ghosh, Kathryn Jackson, Ahn Chung, Daniel Erickson, Karen Mancera-Cuevas, Abel Kho, Rosalind Ramsey-Goldman
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S03: Oral Presentation - NLP Case Studies

In Search of the Holy Grail: Applying NLP to Identify Recurrent Cancer
Rebecca A. Ottesen, Janet Nikowitz, Julie Hom, Julie A. Kilburn, Thanh Dellinger, Joyce C. Niland
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Enabling Seizure Classification in Critical Care via Active Learning on Massive Electroencephalogram (EEG) Data
Sungtae An, Olivier Deiss, Siddharth Biswal, Jin Jing, Haoqi Sun, Eric S. Rosenthal, Sahar Zafar, M. Brandon Westover, Jimeng Sun
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S07: Oral Presentations - Data Exchange and Patient Management

Integrating Social Determinants of Health in an Electronic Medical Record to Better Manage Pediatric Asthma
Anjum Khurshid, Steven B. Andrews, Matt Sither, Autumn Kaerwer, Rick Peters
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S11: Oral Presentations - Genomics

Reference-based annotation of single-cell transcriptomes identifies a profibrotic macrophage niche after tissue injury
Dvir Aran
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S17: Oral Presentations - Visualizing and Use of Data for Quality Improvement

Monitoring the Monitors: Data-Driven Alarm Management Strategies for Clinical Devices at Duke Health
Bilikis J. Akindele
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Automated Report Turnaround Time Workflow Reconstruction and Analysis in Echocardiography Lab Based on PACS Data
Qianxi li, Justin Wiggs, Deyu Sun, Craig Sable
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S21: Oral Presentations - Patient Engagement

Impact of Promoting Patient Access to their Electronic Healthcare Record: A Systematic Review
Archana Tapuria, Talya Porat, Dipak KALRA, Glen D'souza, Vasa Curcin
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S25: Oral Presentations - Applications of Data Sharing & Data Standards

Applying a FHIR-based Data Normalization Pipeline to the Identification of Patients with Obesity and Its Comorbidities from Discharge Summaries
Na Hong, Andrew Wen, Daniel Stone, Paul Kingsbury, Luke V. Rasmussen, Prakash Adekkanattu, Yuan Luo, Jyotishman Pathak, Hongfang Liu, Guoqian Jiang
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S30: Oral Presentations - Data Mining Appliced to Knowledge

Quantifying and adjusting for missing data bias in claims data
Rachel D. Melamed
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S33: Oral Presentations - Cancer and Genetics Informatics

Classifying Non-Small Cell Lung Cancer Histopathology Types and Transcriptomic Subtypes using Convolutional Neural Networks
Kun-Hsing Yu, Feiran Wang, Gerald Berry, Christopher Re, Russ B. Altman, Michael Snyder, Isaac S. Kohane
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Interpretation and self-efficacy of DTC genetic tests by medical professionals
Scott P. McGrath, Nephi Walton, Marc S. Williams, Katherine K. Kim, Kiran Bastola
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S35: Oral Presentations - Phenotyping, Coding and Quality Methods

Medical Sequence Encoding for the Stratification of Complex Disorder
Isotta Landi, Riccardo Miotto, Hao-Chih Lee, Matteo Danieletto, Alessandro Laganà, Cesare Furlanello, Joel Dudley
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S39: Oral Presentations - Case Studies: Clinical

Automatic Trial Eligibility Surveillance: Pilot Study Focused on Breast Cancer
Stephane Meystre, Paul M. Heider, Youngjun Kim, Daniel Aruch, Carolyn Britten
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S44: Oral Presentations - Workflow and Teamwork

An Outpatient Performance Improvement Project: Workflow Analysis to Improve Care Coordination in the Homeless Population by Evaluating Patient Wait Times
Angela Ross, Kai Makeda, Travis F. Holder
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Poster Session 1

Unraveling Renal Cell Carcinoma Differentiation and Prognoses by Integrative Histopathology-Transcriptomics Analysis (student)
Rebecca Barber, Isaac S. Kohane, Kun-Hsing Yu
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Definitions matter: Data issues in sepsis quality improvement efforts
Daniel G. Duncan, Rebecca Kitzmiller, Carol F. Durham
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Using Apple Machine Learning Algorithms to Detect and Subclassify Non-Small Cell Lung Cancer
Steven A. Borkowski, Stephen M. Mastorides, Catherine P. Wilson, Lauren A. DeLand, Andrew A. Borkowski
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Provider Survey on Automated Clinical Decision Support System for Cardiovascular Risk Assessment
Alisha P. Chaudhry, Sujith Samudrala, Francisco Lopez-Jimenez, Jane Shellum, Rick A. Nishimura, Rajeev Chaudhry, Hongfang Liu, Adelaide M. Arruda-Olson
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Poster Session 2

REDCap Data Convert: a script to ETL spreadsheet data for REDCap
Kaitlyn Lavan, Peter D. Stetson, John Philip
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Predictive Models to Identify Axial Spondyloarthritis
Shaobo Pei, Gopi Penmetsa, Grant Cannon, Daniel Clegg, Brian Sauer, Jessica Walsh
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Development and Evaluation of a Website to Facilitate Cascade Screening for Familial Hypercholesterolemia
Hana Bangash, Thomas Suther, David Kochan, Iftikhar J. Kullo
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eagle-i: An Open Source, Ontology-Driven and Domain-Agnostic Discovery Platform
Sophia K. Cheng, Juliane Schneider, Marc Ciriello, Diane Keogh, Douglas Macfadden
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Unsupervised Topic Modeling to Quantify Severe Infection Heterogeneity
Alison E. Fohner, John D. Greene, Brian L. Lawson, Jonathan H. Chen, Patricia Kipnis, Gabriel J. Escobar, Vincent Liu
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Computational Drug Repositioning for Precision Cancer Oncology based on Cancer Cells Screening and Analysis
Shaofeng Wu, Yaoqin Lu, Majumdar Abhishek, Lang Li, Lijun Cheng
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S18: Systems Demonstrations - Clinical Data in Research

Data visualizations and millisecond queries in i2b2
Nick Benik, Katy Borner, Nick Brown, Bruce W. Herr, Yun William Yu, Griffin M. Weber
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S36: Systems Demonstrations - Clinical Data in Research III

DeDeRE - Deriving data accuracy and quality from Electronic Medical Record data for use in clinical research
Ye "Devin" Tian, Harry Menegay, Erin Fogarty, Mark F. Beno, Jill Barnholtz-Sloan
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W07: Hands-on Full Lifecycle Data Science Workshop

Lisiane Pruinelli, Tamara J. Winden, Steven G. Johnson
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Sponsors

AMIA would like to thank the 2019 Informatics Summit Sponsors

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