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Meetings & Education
2008 AMIA Summit on Translational Bioinformatics
Papers and Posters
Papers Papers presented at the Summit on Translational Bioinformatics will showcase the latest progress on using informatics approaches to improve translational biomedical research. Three scientific papers will be featured in each 90 minute session. At the Summit, Authors will have 20 minutes to present their work, along with 10 minutes for questions and discussion. Topics for papers will include:
Posters are the preferred format for presenting preliminary research results or results of small scale studies, illustrating and discussing innovative systems and services, describing experimental and in-practice projects and programs, reporting experiences with educational programs, and other dimensions of translational bioinformatics. Poster sessions are a component of the summit designed to offer direct access to the authors in a way not possible through podium presentations. The following is a preview of some of the posters that will be presented at the Summit on Translational Bioinformatics. Track 1: Informatics methods for the analysis of molecular and clinical measurements NIH National Center for Integrative Biomedical Informatics (NCIBI) James Cavalcoli, University of Michigan, Ann Arbor, MI Tight Integration of a Tissue Banking System and Information Warehouse Selnur Erdal, OSU Medical Center, Columbus, OH Towards A Translational Healthcare Organization: Creating the Informatics Infrastructure Rosemary Ferdinand, Deloitte, Caldwell, NJ Prior knowledge in the inference of cellular networks with dynamic Gaussian networks: results from a simulation study Fulvia Ferrazzi, University of Pavia, Pavia, Italy ICU Data Mart: Informatics Infrastructure for Automatics Calculation of Critical Care Prognostic Scores Vitaly Herasevich, Mayo Clinic, Rochester, MN A Library-Based Approach to Teaching Translational Informatics Kristi Holmes, Washington University in St. Louis School of Medicine, St. Louis, MO NCIBI Portal - Collaborative Biomedical Research Environment Yuri Ikeda, University of Michigan, Ann Arbor, MI A Document Clustering and Ranking System for Exploring MEDLINE Citations Ying Liu, University of Texas at Dallas, Richardson, TX Development of a critical care data warehouse to support clinical data management and facilitate knowledge discovery Geoffrey Manley, University of CA, San Francisco, San Francisco, CA Enterprise-wide authentication and authorization strategies for support of translational research informatics George Mathew, Fox Chase Cancer Center, Philadelphia, PA Translating Bioinformatics and Computational Biology in a Biomedical Informatics Graduate Program Shannon McWeeney, Oregon Health and Sciences University, Portland, OR Sharing Data Containers in Translational Research Peter Mork, The MITRE Corp, McLean, VA Using Latent Class Analysis to Define Disease Phenotypes Raymond Ownby, University of Miami Miller School of Medicine, Miami Beach, FL CoMotion: A Visualization Environment for Information Integration Joe Pedrazzoli, General Dynamics, Pittsburgh, PA Information Model Unification and Data Management for Medical Data Integration Christopher Roos, Medicel Oy, Keilaranta, Espoo, Finland OCRe: The Ontology of Clinical Research Ida Sim, University of CA, San Francisco, San Francisco, CA Track 2: Relating and representing phenotypes and disease CaTER: University of Michigan's Web Portal for Clinical and Translational Empowered Research Suresh Bhavnani, University of Michigan, Ann Arbor, MI Semantic Web for Translational Biomedicine: Two Pilot Experiments Olivier Bodenreider, National Library of Medicine, Bethesda, MD The BioMed Ontology: Relating Diseases and Pathways Julie Chabalier, Universite de Rennes, Rennes, France An Efficient Solution for Mapping Free Text to Ontology Terms Manhong Dai, University of Michigan, Ann Arbor, MI Heart failure Origin - Ontology Task - Using ontology development to categorize and analyze clinical data of with nonischemic dilated cardiomyopathy David Kao, Stanford University, Stanford, CA Interactive Autism Network (IAN): A Model for Creating an Efficient and Responsive Online Research Infrastructure Paul Law, Kennedy Krieger Institute, Baltimore, MD Identifying Text-based Discriminators for Differential Diagnosis of Long QT Syndrome in Children Long Qu, Childrens Hospital of Philadelphia, Philadelphia, PA Data Structure and accompanying tools for the dissemination, analysis, storage and integration of Reverse Phase Protein Arrays with clinical and molecular measurements using a novel semantic database S3DB Romesh Stanislaus, University of Texas, MD Anderson Cancer Center, Houston, TX Track 3: Dissecting disease through the study of organisms, evolution, and taxonomy Integration of Clinical, Molecular, and Cellular phenotypes to unravel the mechanisms of complex diseases Banu Gopalan, Cleveland Clinic, Cleveland, OH The Bioinformatics System for the Research of Interleukin 1 Gene Polymorphisms and Related Factors in Gastric Cancers Kuan-Liang Kuo, Taipei City Hospital, Taiwan, China Track 4: Computational approaches to finding molecular mechanisms and therapies for disease Differential renal transcriptional profiles characterize distinct subgroups of patients with Lupus Nephritis Celine Berthier, University of Michigan, Ann Arbor, MI Application of a rules based reasoning engine in Clinical Trial management applications Keith Boyce, ITN/UCSF, Pittsburgh, PA Toxicoproteomic Analysis of the Effects of Methylazoxymethanol (MAM) on the Neonatal Liver: Potential Serum Biomarkers for Toxicity. Suzanne Fei, Oregon Health and Sciences University, Portland, OR Flexibility and Motion Prediction in Proteins Samuel Flores, Stanford University, Stanford, CA Generating renal disease outcome predictors in a multidisciplinary international consortium: Using mRNA expression profiles of renal biopsies for prediction of GFR Anna Henger, University of Michigan, Ann Arbor, MI A Semantic-Wed Based Method for Abstraction of Drug Resistance Patterns Genaro Hernandez, Stanford University, Stanford, CA Interference of globin genes with biomarker discovery for allograft rejection in peripheral blood samples Li Li, Stanford University, Stanford, CA Variable Selection of Biomarker, Phenotypic, and Clinical Data with Regression Trees Marilyn McClelland, North Carolina Central University, Durham, NC A Knowledge Management Tool for Translational Research Alberto Riva, University of Florida, Gainesville, FL Translational Bridge for Personalized Medicine: Biospecimen Information Management Ethel Rubin, BioFortis, Inc., Columbia, MD Detecting recurrent DNA copy number alterations from array CGH data with application to follicular lymphoma Sohrab Shah, University of British Columbia, Vancouver, British Columbia, Canada SNPit: An Integration Tool for Functional SNP Annotation Terry Shen, University of Washington, Seattle, WA An Adaptive Tool for Biomedical Literature Retrieval David States, University of Michigan, Ann Arbor, MI Molecular Modeling of Dihydropteroate Synthase (DHPS) of Plasmodiun Falciparum and Virtual Screening, Molecular Dynamics, Designing and Docking studies of the Novel DHPS Inhibitors in Falciparum Malaria Rajakrishnan Vijayakrishnan, All India Institute of Medical Sciences, New Delhi, , India Finding significant, shared terms between sets of documents for exploring clusters of biomedical entities Shirley Wu, Stanford University, Stanford, CA |
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Summit
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Last Modified:
February 7, 2008
© 2007 American Medical Informatics Association. All rights reserved. |